Making alignments prettier
نویسندگان
چکیده
منابع مشابه
FliPpr: A Prettier Invertible Printing System
When implementing a programming language, we often write a parser and a pretty-printer. However, manually writing both programs is not only tedious but also error-prone; it may happen that a prettyprinted result is not correctly parsed. In this paper, we propose FliPpr, which is a program transformation system that uses program inversion to produce a CFG parser from a pretty-printer. This novel...
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The search for similarity between two biological sequences lies at the core of many applications in bioinformatics. This paper aims to highlight a few of the principles that should be kept in mind when evaluating the statistical significance of alignments between sequences. The extreme value distribution is first introduced, which in most cases describes the distribution of alignment scores bet...
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SUMMARY Here we describe a set of tools implemented within the Galaxy platform designed to make analysis of multiple genome alignments truly accessible for biologists. These tools are available through both a web-based graphical user interface and a command-line interface. AVAILABILITY AND IMPLEMENTATION This open-source toolset was implemented in Python and has been integrated into the onlin...
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Top-down (LL) context-sensitive parsers with integrated synthesis and use of attributes are easy to express in functional programming languages, but the elegant functional programming model can also serve as an exact prototype for a more efficient implementation of the technology in ANSI C. The result is a compiler-compiler that takes unlimited lookahead and backtracking, the extended BNF notat...
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ژورنال
عنوان ژورنال: Genome Biology
سال: 2000
ISSN: 1474-760X
DOI: 10.1186/gb-2000-1-2-reports2047